species:   Scscl
pid:       PID1669
parent:    Ssc-milR-145
paralog:   
locus:     NW_001820829.1:262463-262547
matures:   ['UGCUUGCUACGAUCUCCGUGG', 'AUUGAAGGCGUAGUAAAGAUC']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820829.1:262463-262547

5 out of bounds
8 alignments
5 proper strand
5 stranded perfect matches

         ***********************                    ***********************          
AAGAGUUGUCCAUUGAAGGCGUAGUAAAGAUCAGCUUGUGCGACAAAAGCUCGAUGCUUGCUACGAUCUCCGUGGAACAAGUCAG
..((.((((((((.((.((((((((((..((((((((.........))))).)))..)))))))).)))).)))).)))).))..
------------------------------------------------------UGCUUGCUACGAUCUCCGUGG---------- l=21 a=2 c
-----------AUUGAAGGCGUAGUAAAGAUC----------------------------------------------------- l=21 a=0 c*
------------------------------------------------------UGCUUGCUACGAUCUCCGUGG---------- l=21 a=2 ma
-----------AUUGAAGGCGUAGUAAAGAUC----------------------------------------------------- l=21 a=0 ma*

------------------------------------------------------UGCUUGCUACGAUCUCCGUGG---------- l=21 a=2 (c,ma)
------------------------------------------------------UGCUUGCUACGAUCUCCGUGGA--------- l=22 a=1 
--------------------------------------UGCGACAAAAGCUCGAUGCUUG------------------------- l=22 a=1 
-------------UGAAGGCGUAGUAAAGAUCAGC-------------------------------------------------- l=22 a=1 

mb-01111
ax-1011011
ku-01
ss-111110111100
fn-101
